The Best Flatbread Pizza Topping Combinations to Make at Home

Flatbread pizza has become a staple in many home kitchens—and for good reason. It’s quick, customizable, and far less fussy than traditional pizza, yet just as satisfying. Whether you’re working with store-bought flatbreads, naan, pita, or making your own, the real magic lies in the toppings. From bold flavors to comforting classics, the right pairing can turn a humble flatbread into something gourmet. In this guide, we’ll dive into the most delicious combinations and have popular flatbread pizza toppings explained so you can confidently craft the perfect pizza at home. 

Why Flatbread Pizza? 

Flatbread is thinner and lighter than traditional pizza dough, which means quicker cooking times, crispier texture, and fewer carbs. That makes it ideal for weeknight dinners, last-minute snacks, or even elevated appetizers at your next gathering. 

Plus, it’s versatile. Whether you’re in the mood for Mediterranean flavors, spicy Mexican heat, or classic Italian simplicity, flatbread can handle it all. 

Let’s explore some of the best topping combinations—categorized by flavor profiles—so you can satisfy any craving with ingredients you probably already have in your kitchen. 

1. Classic Margherita with a Twist 

Ingredients: Fresh mozzarella, sliced tomatoes, garlic, olive oil, basil, and balsamic glaze 

This timeless combo gets an upgrade with a drizzle of garlic-infused olive oil on the base and a post-bake splash of balsamic glaze. Fresh basil leaves added after baking keep the flavor bright. 

Why it works: The simplicity of tomato, basil, and mozzarella creates a harmonious flavor profile, while balsamic glaze adds tangy sweetness to balance the richness.

2. Mediterranean Veggie Delight 

Ingredients: Hummus, kalamata olives, cherry tomatoes, red onion, spinach, crumbled feta, oregano 

Ditch the tomato sauce and use hummus as a creamy, plant-based base. Top with Mediterranean staples like olives and feta, and finish with fresh oregano or za'atar. 

Why it works: The creaminess of hummus pairs beautifully with the salty tang of olives and feta. It’s a great vegetarian option that doesn’t sacrifice flavor.

3. Buffalo Chicken & Blue Cheese 

Ingredients: Shredded chicken tossed in buffalo sauce, mozzarella, red onion, blue cheese crumbles, chopped celery 

For spice lovers, this combo delivers the heat of buffalo wings with the comfort of pizza. The celery added after baking gives it crunch and a refreshing contrast. 

Why it works: The creaminess of the cheese offsets the spicy chicken, while the blue cheese adds depth and the celery keeps it balanced.

4. BBQ Pulled Pork & Slaw 

Ingredients: BBQ sauce, shredded pork, red onion, mozzarella, apple cider slaw (post-bake) 

Start with a BBQ sauce base, add your pulled pork and cheese, and once it’s hot and bubbly, top with a vinegar-based slaw. 

Why it works: The contrast between warm, smoky pork and the cold, tangy slaw creates a flavor bomb with every bite.

5. Pear, Gorgonzola & Walnuts 

Ingredients: Sliced pears, gorgonzola cheese, honey, arugula, crushed walnuts 

For a more refined option, this flatbread is the perfect mix of sweet and savory. Add a drizzle of honey after baking for added complexity. 

Why it works: This is a restaurant-quality flavor combo that balances fruit, funk, bitterness, and crunch. It pairs beautifully with wine or as an appetizer.

6. Breakfast Flatbread 

Ingredients: Scrambled eggs or whole eggs, mozzarella or cheddar, bacon or sausage, spinach, hot sauce 

Who says pizza isn’t for breakfast? Use a thin layer of olive oil or ricotta, layer your breakfast faves, and bake until golden. If using a whole egg, crack it on top before baking. 

Why it works: It’s hearty, satisfying, and lets you repurpose breakfast leftovers in a fun, filling way.

7. Caprese + Pesto 

Ingredients: Basil pesto, cherry tomatoes, mozzarella, balsamic glaze, arugula 

This variation of the classic Caprese adds a punch of flavor with a pesto base. Post-bake, toss on some arugula and glaze for a peppery, acidic bite. 

Why it works: Pesto intensifies the basil flavor, and the arugula and balsamic bring freshness and tang to the richness of the cheese.

8. Tandoori Chicken Flatbread 

Ingredients: Tandoori-marinated chicken, red onion, mozzarella, cilantro, mint yogurt drizzle 

Marinate chicken in a tandoori spice blend and yogurt, cook until tender, and place it over a light tomato or tikka masala sauce base. Add mozzarella and red onions before baking. Finish with chopped cilantro and a mint yogurt drizzle. 

Why it works: It blends Indian flavors with a Western format—warm spices, creamy yogurt, and melted cheese are a match made in flavor heaven. 

9. Roasted Veggie & Goat Cheese 

Ingredients: Zucchini, eggplant, red pepper, goat cheese, balsamic glaze, olive oil base 

Roast your veggies ahead of time and scatter them over a lightly oiled flatbread. Crumble goat cheese and bake until golden. Finish with balsamic or even lemon zest. 

Why it works: Roasting enhances the veggies’ sweetness, and goat cheese adds tang and creaminess without being too heavy.

10. Spicy Shrimp & Avocado 

Ingredients: Cooked shrimp tossed in Cajun seasoning, mozzarella, red onion, avocado (post-bake), lime juice, cilantro 

The shrimp adds a kick, the avocado cools it down, and a squeeze of lime over the top brings it all together. 

Why it works: This combo has heat, creaminess, and brightness—plus it's protein-packed and feels indulgent without being greasy.

11. Fig, Prosciutto & Arugula 

Ingredients: Fig jam, prosciutto slices, mozzarella, arugula, balsamic reduction 

Spread fig jam over the base and top with mozzarella and prosciutto. After baking, add fresh arugula and a generous drizzle of balsamic. 

Why it works: Sweet fig jam with salty prosciutto and the bitterness of arugula is a gourmet combo that feels restaurant-worthy. 

12. Mexican-Inspired Flatbread 

Ingredients: Refried beans or enchilada sauce, seasoned ground beef or tofu, cheddar, jalapeños, corn, chopped tomatoes, sour cream (post-bake) 

Think of this as taco night meets pizza night. Finish with sour cream or a dollop of guacamole. 

Why it works: It’s familiar, fun, and incredibly filling. Great for picky eaters or family-style dinners. 

13. Mushroom Truffle Flatbread 

Ingredients: Mixed mushrooms, mozzarella or fontina, garlic, fresh thyme, truffle oil 

Sauté mushrooms with garlic and thyme, then spread them over a cheesy base. A few drops of truffle oil after baking make this truly decadent. 

Why it works: Earthy, aromatic, and rich—but still simple. It’s a must-try for mushroom lovers

14. Caramelized Onion & Bacon 

Ingredients: Caramelized onions, bacon bits, gruyère or Swiss cheese, black pepper 

Start with a white sauce or olive oil base, and let the onions and bacon shine. Gruyère gives it that French onion soup flavor. 

Why it works: Sweet and salty with deep umami. This one is surprisingly satisfying without needing heavy toppings.

Where to Find Inspiration Outside the Kitchen 

If you’re looking for even more flavor inspiration or want to try flatbreads before recreating them at home, visit an Authentic South Asian café in Ann Arbor, MI. These local spots are innovating with toppings like butter chicken, spiced paneer, pickled onions, and mint chutneys—all served on soft naan or crispy flatbread. By combining traditional South Asian ingredients with pizza-style presentation, they’ve created an entirely new genre of flatbread fusion that’s both bold and comforting. It's a perfect example of how global flavors can transform even the most familiar foods into something new and unforgettable.